JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BRD1_chr22_49768283_49832873	0/0	g0233	1	0	0	0	0	1	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	g0234	1	1	0	0	0	0	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	g0235	1	0	1	0	0	0	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	g0236	1	1	0	0	0	0	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	g0237	1	1	0	0	0	0	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	g0238	1	1	0	0	0	0	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	g0239	1	1	0	0	0	0	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	g0240	1	0	0	0	0	1	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	g0241	1	0	0	0	0	1	BRD1	chr22	49768283	49832873
BRD2_chr6_32963594_32986501	0/0	g0001	47	3	1	37	1	5	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0002	37	1	6	29	0	1	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0003	34	0	4	24	1	5	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0004	30	0	4	22	1	3	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0005	20	3	6	7	3	1	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0006	16	0	3	11	2	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0007	12	0	2	9	0	1	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0008	12	2	0	9	0	1	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0009	11	0	8	1	1	1	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0010	10	5	4	0	1	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0011	10	0	0	10	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0012	8	0	2	1	0	5	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0013	8	0	4	3	0	1	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0014	7	1	0	3	0	3	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0015	7	2	1	2	1	1	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0016	7	7	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0017	6	0	3	3	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0018	5	1	2	0	2	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0019	5	5	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0020	4	4	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0021	4	0	0	2	0	2	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0022	4	0	2	2	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0023	4	0	0	4	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0024	4	3	1	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0025	4	0	0	4	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0026	4	4	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0027	4	3	1	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0028	4	1	1	0	2	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0029	3	0	1	2	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0030	3	0	2	0	1	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0031	3	0	3	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0032	3	0	3	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0033	3	0	0	3	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0034	3	0	0	2	0	1	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0035	3	0	1	0	0	2	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0036	3	3	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0037	3	1	2	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0038	3	0	1	2	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0039	3	2	1	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0040	2	2	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0041	2	2	0	0	0	0	BRD2	chr6	32963594	32986501