JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BRD2_chr6_32963594_32986501	0/0	g0092	1	1	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0093	1	0	0	1	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0094	1	0	0	1	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0095	1	0	0	1	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0096	1	1	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0097	1	0	1	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0098	1	1	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0099	1	1	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0100	1	1	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0101	1	0	0	1	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0102	1	0	0	0	0	1	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0103	1	0	0	1	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0104	1	0	0	1	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0105	1	0	0	1	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0106	1	0	0	1	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0107	1	0	0	1	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0108	1	1	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0109	1	0	0	1	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0110	1	0	0	0	0	1	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0111	1	0	0	1	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0112	1	0	1	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0113	1	0	0	0	0	1	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0114	1	0	0	1	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0115	1	1	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0116	1	0	1	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0117	1	0	1	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0118	1	1	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0119	1	1	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0120	1	0	0	0	0	1	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0121	1	1	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0122	1	1	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0123	1	0	0	1	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0124	1	0	0	1	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0125	1	1	0	0	0	0	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	g0126	1	1	0	0	0	0	BRD2	chr6	32963594	32986501
BRD3OS_chr9_134020481_134036587	1/1	g0001	209	76	44	57	9	21	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	g0002	112	8	15	64	5	20	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	g0003	5	4	1	0	0	0	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	g0004	3	3	0	0	0	0	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	g0005	2	0	0	1	0	1	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	g0006	1	1	0	0	0	0	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	g0007	1	1	0	0	0	0	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	g0008	1	1	0	0	0	0	BRD3OS	chr9	134020481	134036587
BRD3_chr9_134025305_134073026	1/0	g0001	6	5	0	0	0	0	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	g0002	6	0	0	3	1	2	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	g0003	5	0	0	5	0	0	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	g0004	4	0	2	2	0	0	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	g0005	4	0	0	4	0	0	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	g0006	3	0	0	0	1	2	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	g0007	3	0	3	0	0	0	BRD3	chr9	134025305	134073026