JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
XAB2_chr19_7614525_7634545	0/0	g0113	1	0	0	1	0	0	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0114	1	0	0	0	0	1	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0115	1	0	0	1	0	0	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0116	1	0	0	0	1	0	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0117	1	0	0	1	0	0	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0118	1	0	0	1	0	0	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0119	1	0	1	0	0	0	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0120	1	0	0	1	0	0	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0121	1	0	0	0	0	1	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0122	1	1	0	0	0	0	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0123	1	0	0	0	0	1	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0124	1	0	0	1	0	0	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0125	1	0	0	1	0	0	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0126	1	0	0	1	0	0	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0127	1	0	0	1	0	0	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0128	1	0	0	0	0	1	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0129	1	1	0	0	0	0	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0130	1	1	0	0	0	0	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	g0131	1	1	0	0	0	0	XAB2	chr19	7614525	7634545
XAF1_chr17_6751046_6780647	0/0	g0001	36	1	11	15	4	5	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0002	28	1	7	14	1	5	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0003	25	0	5	14	3	3	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0004	16	0	6	9	0	1	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0005	15	0	1	13	1	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0006	13	0	0	11	0	2	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0007	11	2	1	8	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0008	9	9	0	0	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0009	9	0	2	4	0	3	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0010	7	0	0	7	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0011	7	1	4	0	0	2	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0012	6	0	0	6	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0013	5	5	0	0	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0014	4	3	1	0	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0015	4	0	0	4	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0016	4	0	0	4	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0017	4	3	1	0	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0018	4	4	0	0	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0019	3	0	0	3	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0020	3	1	0	0	0	2	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0021	3	3	0	0	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0022	3	0	0	3	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0023	3	0	0	2	0	1	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0024	3	0	1	2	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0025	3	0	0	3	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0026	3	0	0	3	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0027	3	0	0	3	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0028	3	3	0	0	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0029	3	0	0	3	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0030	3	3	0	0	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0031	3	3	0	0	0	0	XAF1	chr17	6751046	6780647