JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
XAF1_chr17_6751046_6780647	1/0	g0182	1	0	0	0	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0183	1	0	0	0	0	1	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0184	1	0	1	0	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0185	1	0	1	0	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0186	1	0	1	0	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0187	1	0	1	0	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0188	1	0	0	1	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0189	1	0	0	1	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0190	1	0	1	0	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0191	1	0	0	0	0	1	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0192	1	0	0	1	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0193	1	0	0	1	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0194	1	0	0	1	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0195	1	0	0	0	1	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0196	1	0	0	1	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0197	1	1	0	0	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0198	1	0	0	1	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0199	1	1	0	0	0	0	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	g0200	1	0	0	1	0	0	XAF1	chr17	6751046	6780647
XAGE1A_chrX_52490808_52505812	0/0	g0001	122	45	26	41	2	8	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0002	51	1	10	25	6	9	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0003	10	0	0	10	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0004	8	1	3	0	2	2	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0005	7	3	0	4	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0006	7	0	6	1	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0007	4	4	0	0	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0008	3	3	0	0	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0009	3	3	0	0	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0010	3	1	0	2	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0011	3	0	2	0	0	1	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0012	2	2	0	0	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0013	2	0	1	1	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0014	1	1	0	0	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0015	1	0	1	0	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0016	1	0	0	0	0	1	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0017	1	0	0	0	0	1	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0018	1	1	0	0	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0019	1	0	1	0	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0020	1	1	0	0	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0021	1	0	0	1	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0022	1	0	1	0	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0023	1	0	0	1	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0024	1	0	1	0	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0025	1	0	0	1	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0026	1	0	0	1	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0027	1	0	1	0	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0028	1	1	0	0	0	0	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	g0029	1	0	0	1	0	0	XAGE1A	chrX	52490808	52505812
XAGE1B_chrX_52507077_52522063	0/0	g0001	155	42	25	64	8	16	XAGE1B	chrX	52507077	52522063
XAGE1B_chrX_52507077_52522063	0/0	g0002	14	0	9	3	0	2	XAGE1B	chrX	52507077	52522063