JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
XBP1_chr22_28789560_28805569	0/0	g0075	1	0	0	1	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0076	1	0	0	1	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0077	1	0	0	1	0	0	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	g0078	1	0	0	1	0	0	XBP1	chr22	28789560	28805569
XCL1_chr1_168571605_168587069	1/0	g0001	152	1	25	105	1	19	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0002	59	0	7	42	0	10	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0003	35	3	10	20	0	2	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0004	26	7	8	5	2	4	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0005	14	13	1	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0006	13	13	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0007	12	12	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0008	11	0	0	10	0	1	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0009	10	1	2	3	0	4	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0010	7	0	0	7	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0011	6	6	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0012	6	0	3	0	3	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0013	5	1	1	0	2	1	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0014	5	0	4	0	0	1	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0015	5	1	2	0	0	2	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0016	4	0	0	4	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0017	3	0	2	0	1	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0018	3	3	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0019	3	3	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0020	3	3	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0021	3	0	0	3	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0022	3	0	0	2	1	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0023	3	0	3	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0024	2	2	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0025	2	2	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0026	2	0	1	0	0	1	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0027	2	0	2	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0028	2	1	0	0	0	1	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0029	2	2	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0030	2	0	0	2	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0031	2	2	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0032	2	2	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0033	2	2	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0034	2	0	0	2	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0035	2	0	0	2	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0036	1	1	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0037	1	1	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0038	1	0	1	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0039	1	0	0	1	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0040	1	0	1	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0041	1	1	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0042	1	0	0	1	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0043	1	0	0	0	1	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0044	1	1	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0045	1	0	0	1	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0046	1	1	0	0	0	0	XCL1	chr1	168571605	168587069