JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
XCL1_chr1_168571605_168587069	0/1	g0047	1	0	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0048	1	0	0	1	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0049	1	0	0	0	0	1	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0050	1	1	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0051	1	0	1	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0052	1	1	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0053	1	1	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0054	1	0	1	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0055	1	1	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0056	1	0	0	0	1	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0057	1	0	1	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0058	1	0	0	1	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0059	1	1	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0060	1	1	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0061	1	0	0	1	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0062	1	0	0	1	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0063	1	0	0	0	0	1	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0064	1	0	1	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0065	1	1	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0066	1	0	0	1	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0067	1	1	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0068	1	0	0	1	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0069	1	0	0	1	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0070	1	0	0	0	0	1	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0071	1	1	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0072	1	0	1	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0073	1	0	0	1	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0074	1	0	0	0	0	1	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0075	1	1	0	0	0	0	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	g0076	1	1	0	0	0	0	XCL1	chr1	168571605	168587069
XCL2_chr1_168535768_168548997	0/0	g0001	134	4	22	93	3	12	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	1/0	g0002	83	9	24	30	5	14	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0003	23	0	0	22	0	1	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0004	22	16	4	0	1	1	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0005	21	2	4	14	0	1	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0006	19	18	1	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0007	18	3	2	7	0	6	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0008	12	0	0	12	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0009	7	0	0	7	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0010	7	7	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0011	7	5	1	0	0	1	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0012	6	6	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0013	4	0	0	4	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0014	4	0	0	4	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0015	4	0	1	0	2	1	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0016	4	0	4	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0017	4	0	4	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0018	3	0	0	0	0	3	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0019	3	2	1	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0020	3	0	0	3	0	0	XCL2	chr1	168535768	168548997