JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
XCL2_chr1_168535768_168548997	0/0	g0021	3	0	3	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0022	3	3	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0023	2	0	0	1	0	1	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0024	2	0	2	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0025	2	0	0	2	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0026	2	0	0	2	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0027	2	0	2	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0028	2	2	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0029	2	2	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0030	1	0	0	0	1	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0031	1	0	0	1	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0032	1	1	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0033	1	0	0	1	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0034	1	0	0	1	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0035	1	0	0	1	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0036	1	1	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0037	1	0	0	1	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0038	1	0	0	0	0	1	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0039	1	0	0	1	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0040	1	0	0	1	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0041	1	0	0	1	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0042	1	1	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0043	1	1	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0044	1	0	0	0	0	1	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/1	g0045	1	0	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0046	1	0	0	0	0	1	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0047	1	0	0	0	0	1	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0048	1	1	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0049	1	1	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0050	1	1	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0051	1	0	1	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0052	1	1	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0053	1	1	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0054	1	0	0	0	0	1	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0055	1	1	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0056	1	1	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0057	1	1	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0058	1	1	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0059	1	1	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0060	1	1	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0061	1	1	0	0	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0062	1	0	0	1	0	0	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	g0063	1	1	0	0	0	0	XCL2	chr1	168535768	168548997
XCR1_chr3_46012007_46032483	0/0	g0001	97	4	25	49	6	13	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	g0002	38	0	4	29	4	1	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	1/1	g0003	37	9	4	21	0	1	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	g0004	32	31	1	0	0	0	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	g0005	26	0	6	9	2	9	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	g0006	17	3	1	9	0	4	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	g0007	16	0	0	16	0	0	XCR1	chr3	46012007	46032483