JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
XDH_chr2_31329321_31419742	0/0	g0334	1	0	0	0	0	1	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0335	1	0	1	0	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0336	1	0	0	1	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0337	1	0	1	0	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0338	1	0	0	1	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0339	1	1	0	0	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0340	1	1	0	0	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0341	1	0	0	1	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0342	1	0	0	1	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0343	1	0	0	1	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0344	1	0	0	1	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0345	1	0	0	1	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0346	1	0	0	1	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0347	1	1	0	0	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0348	1	0	1	0	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0349	1	1	0	0	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0350	1	0	1	0	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0351	1	1	0	0	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0352	1	1	0	0	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0353	1	1	0	0	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0354	1	1	0	0	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0355	1	1	0	0	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0356	1	0	1	0	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0357	1	0	1	0	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0358	1	0	1	0	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0359	1	0	1	0	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0360	1	0	0	1	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0361	1	0	0	1	0	0	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0362	1	0	0	0	0	1	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	g0363	1	0	1	0	0	0	XDH	chr2	31329321	31419742
XG_chrX_2747040_2821500	0/0	g0001	2	0	2	0	0	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0002	1	1	0	0	0	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0003	1	0	1	0	0	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0004	1	1	0	0	0	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0005	1	0	1	0	0	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0006	1	0	1	0	0	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0007	1	1	0	0	0	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0008	1	1	0	0	0	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0009	1	1	0	0	0	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0010	1	1	0	0	0	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0011	1	1	0	0	0	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0012	1	0	0	1	0	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0013	1	0	1	0	0	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0014	1	0	0	0	1	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0015	1	1	0	0	0	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0016	1	0	0	1	0	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0017	1	0	0	0	0	1	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0018	1	1	0	0	0	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0019	1	1	0	0	0	0	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	g0020	1	1	0	0	0	0	XG	chrX	2747040	2821500