JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
XKR8_chr1_27954973_27973093	0/1	g0001	102	12	25	40	6	18	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0002	84	15	14	46	2	7	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0003	61	1	13	32	7	8	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0004	41	0	2	37	0	2	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0005	13	0	0	12	0	1	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0006	11	5	4	0	1	1	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0007	11	5	1	5	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0008	10	0	7	3	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	1/0	g0009	9	8	0	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0010	9	8	1	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0011	6	2	0	1	0	3	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0012	6	6	0	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0013	5	5	0	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0014	4	4	0	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0015	4	0	1	3	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0016	4	2	2	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0017	3	1	2	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0018	3	1	0	2	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0019	3	0	0	3	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0020	2	2	0	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0021	2	0	1	1	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0022	2	0	0	1	0	1	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0023	2	0	0	2	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0024	2	0	1	0	0	1	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0025	2	2	0	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0026	2	0	0	1	1	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0027	2	1	1	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0028	2	0	1	0	1	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0029	2	0	2	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0030	1	0	0	1	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0031	1	1	0	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0032	1	1	0	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0033	1	1	0	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0034	1	0	0	1	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0035	1	1	0	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0036	1	1	0	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0037	1	1	0	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0038	1	1	0	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0039	1	1	0	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0040	1	1	0	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0041	1	0	0	1	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0042	1	0	0	0	0	1	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0043	1	0	0	0	0	1	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0044	1	0	0	1	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0045	1	0	0	1	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0046	1	0	0	1	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0047	1	0	1	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0048	1	1	0	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0049	1	1	0	0	0	0	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	g0050	1	0	0	1	0	0	XKR8	chr1	27954973	27973093