JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
XK_chrX_37680791_37737130	0/0	g0152	1	0	0	0	0	1	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0153	1	0	0	0	0	1	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0154	1	1	0	0	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0155	1	0	0	0	0	1	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0156	1	0	1	0	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0157	1	1	0	0	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0158	1	1	0	0	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0159	1	0	0	1	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0160	1	0	0	1	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0161	1	0	0	1	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0162	1	1	0	0	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0163	1	1	0	0	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0164	1	0	0	0	0	1	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0165	1	1	0	0	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0166	1	0	0	0	0	1	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0167	1	0	0	1	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0168	1	1	0	0	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0169	1	1	0	0	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0170	1	1	0	0	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0171	1	0	0	0	0	1	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0172	1	0	1	0	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0173	1	1	0	0	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0174	1	1	0	0	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0175	1	1	0	0	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0176	1	1	0	0	0	0	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	g0177	1	0	1	0	0	0	XK	chrX	37680791	37737130
XNDC1N_chr11_71875704_71933594	0/0	g0001	4	0	2	0	0	2	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0002	4	0	1	2	1	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0003	3	0	2	0	1	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0004	3	0	3	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0005	2	0	1	0	1	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0006	2	0	0	2	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0007	2	0	0	2	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0008	2	0	0	2	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0009	2	2	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0010	2	0	2	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0011	2	0	1	1	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0012	2	0	0	2	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0013	2	2	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0014	2	2	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0015	2	0	0	0	0	2	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0016	2	0	0	2	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0017	2	2	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0018	2	0	0	2	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0019	2	2	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0020	2	2	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0021	1	0	0	0	0	1	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0022	1	0	0	0	0	1	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0023	1	0	0	0	0	1	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0024	1	0	0	0	0	1	XNDC1N	chr11	71875704	71933594