JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
XNDC1N_chr11_71875704_71933594	0/0	g0275	1	0	0	0	1	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0276	1	0	0	1	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0277	1	0	0	1	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0278	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0279	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0280	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0281	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0282	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0283	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0284	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0285	1	0	1	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0286	1	0	1	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0287	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0288	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0289	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0290	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0291	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0292	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0293	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0294	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0295	1	0	0	1	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0296	1	0	1	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0297	1	0	1	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0298	1	0	0	0	0	1	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0299	1	0	0	1	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0300	1	0	0	1	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0301	1	0	0	1	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0302	1	0	0	1	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0303	1	0	1	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0304	1	0	0	1	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0305	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0306	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0307	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0308	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0309	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0310	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0311	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	g0312	1	1	0	0	0	0	XNDC1N	chr11	71875704	71933594
XPA_chr9_97669909_97702340	0/0	g0001	33	1	5	27	0	0	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	g0002	23	1	2	20	0	0	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	g0003	20	0	3	17	0	0	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	g0004	18	0	11	6	0	1	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	g0005	17	0	1	12	1	3	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	g0006	9	0	2	2	0	5	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	g0007	9	8	1	0	0	0	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	g0008	9	0	2	5	1	1	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	g0009	8	0	0	8	0	0	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	g0010	8	0	7	1	0	0	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	g0011	7	0	1	4	1	1	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	g0012	7	0	5	0	2	0	XPA	chr9	97669909	97702340