JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
XPA_chr9_97669909_97702340	0/0	g0163	1	0	0	0	0	1	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	g0164	1	1	0	0	0	0	XPA	chr9	97669909	97702340
XPC_chr3_14140147_14183601	0/0	g0001	32	5	3	23	0	1	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0002	22	0	0	19	1	2	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/1	g0003	16	1	5	2	1	6	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0004	14	0	5	9	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0005	12	1	4	0	5	2	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0006	10	0	4	6	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0007	10	0	3	7	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0008	5	5	0	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0009	5	0	3	0	2	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0010	5	3	2	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0011	5	5	0	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0012	5	0	0	5	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0013	5	0	0	5	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0014	5	0	1	2	1	1	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0015	4	4	0	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0016	4	0	0	4	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0017	4	0	0	4	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0018	4	4	0	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0019	3	3	0	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0020	3	3	0	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0021	3	0	0	0	0	3	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0022	3	0	0	0	0	3	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0023	3	0	0	3	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0024	3	3	0	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0025	3	0	1	0	1	1	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0026	3	3	0	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0027	3	0	0	2	0	1	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0028	3	0	0	3	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0029	3	3	0	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0030	3	2	1	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0031	3	0	0	3	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0032	2	0	2	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0033	2	0	1	0	0	1	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0034	2	2	0	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0035	2	2	0	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0036	2	1	1	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0037	2	0	2	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0038	2	2	0	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0039	2	2	0	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0040	2	2	0	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0041	2	0	0	2	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0042	2	2	0	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0043	2	2	0	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0044	2	0	0	2	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0045	2	0	2	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0046	2	0	0	2	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0047	2	0	2	0	0	0	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	g0048	2	0	2	0	0	0	XPC	chr3	14140147	14183601