JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
XPR1_chr1_180627022_180895279	0/0	g0294	1	0	1	0	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0295	1	0	0	1	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0296	1	0	0	0	0	1	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0297	1	0	0	0	0	1	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0298	1	0	0	0	0	1	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0299	1	1	0	0	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0300	1	0	0	1	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0301	1	0	0	1	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0302	1	1	0	0	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0303	1	1	0	0	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0304	1	0	1	0	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0305	1	1	0	0	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0306	1	1	0	0	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0307	1	1	0	0	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0308	1	0	0	1	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0309	1	1	0	0	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0310	1	0	0	1	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0311	1	0	0	1	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0312	1	0	0	1	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0313	1	0	0	1	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0314	1	0	0	1	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0315	1	0	0	1	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0316	1	0	0	1	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0317	1	0	0	1	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0318	1	0	0	0	0	1	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0319	1	0	0	1	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0320	1	1	0	0	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0321	1	1	0	0	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0322	1	1	0	0	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0323	1	0	0	1	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0324	1	0	1	0	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0325	1	0	1	0	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0326	1	0	0	1	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0327	1	0	0	1	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0328	1	0	1	0	0	0	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	g0329	1	0	0	1	0	0	XPR1	chr1	180627022	180895279
XRCC1_chr19_43538311_43580527	0/0	g0001	12	1	1	7	1	2	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	g0002	7	0	1	3	0	3	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	g0003	6	0	4	2	0	0	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	g0004	5	4	1	0	0	0	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	g0005	4	0	1	2	0	1	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	g0006	4	0	0	4	0	0	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	g0007	4	0	0	4	0	0	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	g0008	4	0	0	4	0	0	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	g0009	4	0	2	0	2	0	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	g0010	3	0	1	2	0	0	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	g0011	3	3	0	0	0	0	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	g0012	3	3	0	0	0	0	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	g0013	3	3	0	0	0	0	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	g0014	3	3	0	0	0	0	XRCC1	chr19	43538311	43580527