JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
XRCC2_chr7_152639776_152681141	0/0	g0318	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0319	1	0	0	0	0	1	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0320	1	0	0	0	0	1	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/1	g0321	1	0	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0322	1	0	1	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0323	1	0	1	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0324	1	0	0	0	0	1	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0325	1	0	1	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0326	1	0	1	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0327	1	0	1	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0328	1	0	1	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0329	1	0	1	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0330	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0331	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0332	1	0	1	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0333	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0334	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0335	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0336	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0337	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0338	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0339	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0340	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0341	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0342	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0343	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0344	1	0	0	0	0	1	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0345	1	0	0	0	0	1	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0346	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0347	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0348	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	g0349	1	1	0	0	0	0	XRCC2	chr7	152639776	152681141
XRCC3_chr14_103692617_103720451	0/0	g0001	53	1	7	39	2	4	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	g0002	44	2	4	31	1	6	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/1	g0003	32	4	9	9	3	6	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	g0004	10	0	7	3	0	0	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	g0005	10	0	1	7	1	1	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	g0006	7	6	1	0	0	0	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	g0007	7	0	4	0	2	1	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	g0008	6	6	0	0	0	0	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	g0009	6	0	0	5	0	1	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	g0010	6	0	0	6	0	0	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	g0011	5	4	1	0	0	0	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	g0012	5	2	1	1	0	1	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	g0013	4	0	0	4	0	0	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	g0014	4	1	3	0	0	0	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	g0015	4	0	0	4	0	0	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	g0016	4	0	0	4	0	0	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	g0017	4	0	0	4	0	0	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	g0018	4	4	0	0	0	0	XRCC3	chr14	103692617	103720451