JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BRD8_chr5_138134770_138183630	0/0	g0357	1	0	0	1	0	0	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	g0358	1	0	0	1	0	0	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	g0359	1	0	0	1	0	0	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	g0360	1	0	0	1	0	0	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	g0361	1	0	0	1	0	0	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	g0362	1	0	0	1	0	0	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	g0363	1	0	0	1	0	0	BRD8	chr5	138134770	138183630
BRD9_chr5_858741_897801	1/0	g0001	48	3	9	30	1	4	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0002	22	0	7	12	0	3	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0003	15	0	0	14	0	1	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0004	12	0	0	12	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0005	9	0	0	9	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0006	8	0	6	2	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0007	7	7	0	0	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0008	5	0	5	0	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0009	5	0	1	3	0	1	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0010	5	0	1	0	1	3	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0011	4	0	2	0	0	2	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0012	4	4	0	0	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0013	4	3	1	0	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0014	4	0	2	2	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0015	3	0	2	0	1	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0016	3	0	0	3	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/1	g0017	3	0	1	0	1	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0018	3	0	2	0	0	1	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0019	3	0	3	0	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0020	3	3	0	0	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0021	2	2	0	0	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0022	2	0	0	2	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0023	2	0	1	1	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0024	2	0	0	2	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0025	2	2	0	0	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0026	2	2	0	0	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0027	2	0	0	0	1	1	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0028	2	0	0	2	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0029	2	0	2	0	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0030	2	0	0	2	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0031	2	2	0	0	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0032	2	0	0	0	0	2	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0033	2	0	0	2	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0034	2	0	0	2	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0035	2	2	0	0	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0036	2	0	0	2	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0037	2	2	0	0	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0038	2	0	2	0	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0039	2	1	1	0	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0040	2	0	0	0	0	2	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0041	2	2	0	0	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0042	2	0	2	0	0	0	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	g0043	2	2	0	0	0	0	BRD9	chr5	858741	897801