JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
XYLT2_chr17_50341126_50366185	0/0	g0101	1	0	0	1	0	0	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	g0102	1	0	0	1	0	0	XYLT2	chr17	50341126	50366185
YAE1_chr7_39561404_39577881	1/1	g0001	132	11	25	72	7	15	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0002	106	18	24	40	8	16	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0003	31	0	0	29	0	2	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0004	30	1	4	22	0	3	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0005	21	12	8	0	0	1	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0006	14	12	2	0	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0007	14	0	6	4	0	4	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0008	9	0	0	9	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0009	9	9	0	0	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0010	8	8	0	0	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0011	7	0	1	3	1	2	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0012	7	2	3	0	1	1	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0013	6	6	0	0	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0014	5	0	0	5	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0015	4	0	0	4	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0016	4	4	0	0	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0017	4	0	0	4	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0018	4	4	0	0	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0019	3	0	0	3	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0020	3	0	0	2	0	1	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0021	3	0	0	3	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0022	3	0	0	2	1	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0023	2	2	0	0	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0024	2	2	0	0	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0025	1	0	0	0	0	1	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0026	1	0	0	1	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0027	1	1	0	0	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0028	1	0	0	1	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0029	1	0	1	0	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0030	1	1	0	0	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0031	1	0	0	1	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0032	1	0	0	1	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0033	1	0	0	1	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0034	1	0	1	0	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0035	1	0	0	1	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0036	1	0	1	0	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0037	1	0	0	1	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0038	1	0	1	0	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0039	1	1	0	0	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0040	1	0	0	1	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0041	1	1	0	0	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0042	1	0	1	0	0	0	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	g0043	1	1	0	0	0	0	YAE1	chr7	39561404	39577881
YAF2_chr12_42152104_42243248	0/0	g0001	2	0	1	0	1	0	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	g0002	2	0	0	2	0	0	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	g0003	2	0	0	1	0	1	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	g0004	2	0	0	2	0	0	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	g0005	2	2	0	0	0	0	YAF2	chr12	42152104	42243248