JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
YIPF1_chr1_53846733_53894797	0/0	g0268	1	0	1	0	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0269	1	1	0	0	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0270	1	1	0	0	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0271	1	1	0	0	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0272	1	0	1	0	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0273	1	0	0	1	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0274	1	0	0	1	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0275	1	0	0	1	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0276	1	0	0	0	0	1	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0277	1	1	0	0	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0278	1	0	0	1	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0279	1	0	0	0	0	1	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0280	1	0	0	0	0	1	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0281	1	1	0	0	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0282	1	0	0	1	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0283	1	0	0	1	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0284	1	0	0	1	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0285	1	0	0	1	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0286	1	0	0	1	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0287	1	0	0	1	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0288	1	0	0	1	0	0	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	g0289	1	0	0	1	0	0	YIPF1	chr1	53846733	53894797
YIPF2_chr19_10917193_10933639	0/0	g0001	150	42	35	42	5	26	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0002	55	6	2	39	2	6	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0003	47	0	5	42	0	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0004	13	12	1	0	0	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0005	12	0	6	6	0	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0006	11	0	1	10	0	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0007	9	0	8	0	1	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0008	8	0	1	3	0	4	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0009	8	0	0	8	0	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	1/1	g0010	5	0	2	0	1	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0011	5	0	2	0	2	1	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0012	5	5	0	0	0	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0013	4	0	1	2	1	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0014	4	1	0	1	1	1	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0015	3	0	0	3	0	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0016	3	0	0	3	0	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0017	3	0	0	3	0	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0018	2	0	2	0	0	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0019	2	2	0	0	0	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0020	2	1	0	1	0	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0021	2	0	1	0	0	1	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0022	2	2	0	0	0	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0023	2	0	0	2	0	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0024	2	0	0	2	0	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0025	2	0	1	1	0	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0026	2	2	0	0	0	0	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0027	2	0	0	0	0	2	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	g0028	2	0	0	2	0	0	YIPF2	chr19	10917193	10933639