JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
YIPF3_chr6_43506832_43521926	0/1	g0002	107	5	19	67	3	12	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0003	24	12	2	6	0	4	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0004	12	12	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0005	8	8	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0006	7	0	3	0	3	1	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0007	7	0	1	1	2	3	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0008	6	6	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0009	6	6	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0010	6	0	0	6	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0011	4	4	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0012	3	3	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0013	2	2	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0014	2	2	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0015	2	2	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0016	2	0	0	2	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0017	2	0	0	2	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0018	2	0	2	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0019	2	0	0	2	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0020	2	2	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0021	2	2	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0022	2	0	0	2	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0023	1	1	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0024	1	1	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0025	1	1	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0026	1	0	1	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0027	1	1	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0028	1	0	0	0	1	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0029	1	0	1	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0030	1	0	0	1	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0031	1	0	0	1	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0032	1	0	0	1	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0033	1	0	0	1	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0034	1	0	0	1	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0035	1	0	0	1	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0036	1	0	0	0	1	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0037	1	1	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0038	1	1	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0039	1	1	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0040	1	1	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0041	1	0	0	0	0	1	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0042	1	0	0	0	0	1	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0043	1	1	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0044	1	0	0	1	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0045	1	1	0	0	0	0	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	g0046	1	0	1	0	0	0	YIPF3	chr6	43506832	43521926
YIPF4_chr2_32272904_32321594	1/0	g0001	15	3	5	6	0	0	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0002	14	0	2	10	1	1	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0003	9	1	0	8	0	0	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0004	8	1	4	1	1	1	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0005	8	0	0	6	0	2	YIPF4	chr2	32272904	32321594