JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
YIPF4_chr2_32272904_32321594	0/0	g0256	1	0	0	1	0	0	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0257	1	0	0	1	0	0	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0258	1	0	0	1	0	0	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0259	1	0	1	0	0	0	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0260	1	0	0	1	0	0	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0261	1	0	0	1	0	0	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0262	1	0	0	0	0	1	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0263	1	0	0	1	0	0	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0264	1	0	0	1	0	0	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0265	1	1	0	0	0	0	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0266	1	0	0	1	0	0	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0267	1	0	0	1	0	0	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0268	1	0	0	1	0	0	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0269	1	0	0	0	0	1	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0270	1	0	0	1	0	0	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0271	1	0	0	1	0	0	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	g0272	1	0	0	1	0	0	YIPF4	chr2	32272904	32321594
YIPF5_chr5_144153162_144175659	0/1	g0001	61	3	9	36	2	10	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0002	48	14	2	29	0	3	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	1/0	g0003	46	2	8	29	2	4	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0004	32	1	6	19	1	5	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0005	29	12	5	11	0	1	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0006	23	1	13	4	2	3	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0007	15	0	0	15	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0008	11	11	0	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0009	7	6	1	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0010	6	4	2	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0011	5	4	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0012	5	0	0	5	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0013	4	0	0	4	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0014	4	0	3	0	1	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0015	4	0	0	0	0	4	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0016	4	0	3	0	1	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0017	3	3	0	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0018	3	0	0	3	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0019	3	0	0	3	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0020	3	0	0	3	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0021	3	0	1	0	2	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0022	3	3	0	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0023	3	0	0	0	3	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0024	3	1	0	0	2	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0025	3	0	1	2	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0026	2	0	2	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0027	2	1	1	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0028	2	2	0	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0029	2	2	0	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0030	2	2	0	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0031	2	0	1	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0032	2	2	0	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0033	2	2	0	0	0	0	YIPF5	chr5	144153162	144175659