JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
YIPF5_chr5_144153162_144175659	0/0	g0084	1	0	0	0	0	1	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0085	1	0	1	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0086	1	1	0	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0087	1	0	0	0	0	1	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0088	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0089	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0090	1	0	0	0	0	1	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0091	1	0	0	0	0	1	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0092	1	0	1	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0093	1	0	1	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0094	1	0	1	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0095	1	0	1	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0096	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0097	1	1	0	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0098	1	0	1	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0099	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0100	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0101	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0102	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0103	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0104	1	1	0	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0105	1	0	0	0	0	1	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0106	1	0	1	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0107	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0108	1	0	0	0	0	1	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0109	1	0	0	0	0	1	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0110	1	0	1	0	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0111	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0112	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0113	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0114	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0115	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0116	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0117	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0118	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0119	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0120	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	g0121	1	0	0	1	0	0	YIPF5	chr5	144153162	144175659
YIPF6_chrX_68494051_68542282	0/0	g0001	31	1	5	19	1	5	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0002	16	6	4	6	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0003	8	7	1	0	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0004	8	0	0	7	0	1	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0005	7	0	0	7	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0006	4	4	0	0	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0007	3	3	0	0	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0008	3	3	0	0	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0009	3	0	0	3	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0010	3	0	1	0	2	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/1	g0011	3	0	2	0	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0012	2	0	0	2	0	0	YIPF6	chrX	68494051	68542282