JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
YIPF6_chrX_68494051_68542282	0/0	g0113	1	0	0	0	0	1	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0114	1	0	0	0	0	1	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0115	1	0	0	0	0	1	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0116	1	0	1	0	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0117	1	0	0	1	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0118	1	0	1	0	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0119	1	0	0	1	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0120	1	0	0	0	0	1	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0121	1	0	0	0	0	1	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0122	1	0	0	1	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0123	1	0	0	1	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0124	1	0	0	1	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0125	1	0	0	1	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0126	1	0	0	0	1	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0127	1	0	0	1	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0128	1	0	0	1	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0129	1	0	0	1	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0130	1	0	0	1	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0131	1	0	0	1	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0132	1	0	0	1	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0133	1	0	0	1	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0134	1	0	0	1	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0135	1	0	0	1	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0136	1	0	0	1	0	0	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	g0137	1	0	0	1	0	0	YIPF6	chrX	68494051	68542282
YIPF7_chr4_44617088_44656625	0/0	g0001	19	0	5	11	1	2	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0002	16	0	0	16	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0003	12	0	3	6	1	2	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0004	11	6	2	0	1	2	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0005	10	0	0	10	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0006	6	0	0	6	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0007	6	0	3	3	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0008	6	0	2	3	0	1	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0009	5	0	0	5	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/1	g0010	4	0	0	3	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0011	4	3	1	0	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0012	4	0	3	1	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0013	4	0	2	2	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0014	4	1	3	0	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0015	3	0	0	3	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0016	3	0	0	3	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0017	3	0	0	3	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0018	3	0	3	0	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0019	3	1	0	0	1	1	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0020	3	0	0	3	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0021	3	0	0	3	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0022	3	3	0	0	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0023	2	2	0	0	0	0	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0024	2	0	0	0	0	2	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	g0025	2	0	1	1	0	0	YIPF7	chr4	44617088	44656625