JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
YJEFN3_chr19_19523911_19542581	0/0	g0058	1	0	0	1	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0059	1	0	1	0	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0060	1	0	0	0	0	1	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0061	1	0	0	0	0	1	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0062	1	0	0	1	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0063	1	0	0	0	1	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0064	1	0	1	0	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0065	1	0	0	1	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0066	1	0	0	1	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0067	1	0	0	0	1	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0068	1	0	1	0	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0069	1	0	0	0	0	1	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0070	1	0	0	1	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/1	g0071	1	0	0	0	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0072	1	1	0	0	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0073	1	0	1	0	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0074	1	0	0	1	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0075	1	0	0	1	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0076	1	0	0	1	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0077	1	1	0	0	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0078	1	1	0	0	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0079	1	1	0	0	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0080	1	1	0	0	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0081	1	1	0	0	0	0	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	0/0	g0082	1	0	0	1	0	0	YJEFN3	chr19	19523911	19542581
YJU2B_chr19_13742895_13768289	0/0	g0001	10	0	4	6	0	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0002	9	0	1	4	0	4	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0003	9	0	1	8	0	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0004	9	0	4	4	1	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0005	8	2	0	4	2	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0006	7	0	0	7	0	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0007	6	0	3	2	0	1	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0008	5	0	2	2	0	1	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0009	5	0	2	3	0	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0010	5	1	1	0	3	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0011	5	0	1	0	1	3	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0012	4	0	0	3	0	1	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0013	4	4	0	0	0	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0014	4	0	0	4	0	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0015	4	0	1	2	0	1	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0016	3	0	0	3	0	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0017	3	0	1	2	0	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0018	3	3	0	0	0	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0019	3	0	0	3	0	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0020	2	0	0	2	0	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0021	2	0	0	2	0	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0022	2	0	0	2	0	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	1/0	g0023	2	0	0	0	1	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0024	2	0	0	2	0	0	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	g0025	2	0	0	2	0	0	YJU2B	chr19	13742895	13768289