JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BRF1_chr14_105204286_105306001	0/0	g0052	1	0	1	0	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0053	1	0	0	0	1	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0054	1	0	0	0	0	1	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0055	1	0	0	1	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0056	1	1	0	0	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0057	1	1	0	0	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0058	1	0	1	0	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0059	1	1	0	0	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0060	1	0	1	0	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0061	1	1	0	0	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0062	1	1	0	0	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0063	1	1	0	0	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0064	1	1	0	0	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0065	1	1	0	0	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0066	1	1	0	0	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0067	1	1	0	0	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0068	1	1	0	0	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0069	1	1	0	0	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0070	1	1	0	0	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0071	1	1	0	0	0	0	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	g0072	1	0	1	0	0	0	BRF1	chr14	105204286	105306001
BRF2_chr8_37838268_37854861	0/0	g0001	114	15	30	56	4	9	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	1/0	g0002	45	6	12	10	3	13	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0003	31	9	11	2	3	6	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0004	22	0	0	19	0	3	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0005	18	0	3	15	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0006	14	0	2	12	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0007	14	5	0	9	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/1	g0008	9	0	0	8	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0009	9	9	0	0	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0010	7	6	0	0	1	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0011	7	0	5	0	2	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0012	6	0	0	4	0	2	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0013	5	5	0	0	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0014	4	4	0	0	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0015	4	0	0	4	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0016	4	4	0	0	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0017	3	3	0	0	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0018	3	3	0	0	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0019	3	3	0	0	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0020	3	3	0	0	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0021	2	2	0	0	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0022	2	0	2	0	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0023	2	0	2	0	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0024	2	0	0	2	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0025	2	0	0	0	0	2	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0026	1	0	0	0	1	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0027	1	0	0	1	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0028	1	0	0	1	0	0	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	g0029	1	1	0	0	0	0	BRF2	chr8	37838268	37854861