JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
YPEL3_chr16_30087314_30101213	0/0	g0011	2	0	0	2	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0012	2	0	0	0	0	2	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0013	2	0	2	0	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0014	2	2	0	0	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0015	2	0	0	2	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0016	1	0	0	1	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0017	1	0	1	0	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0018	1	1	0	0	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0019	1	0	1	0	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0020	1	0	0	1	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0021	1	0	0	1	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0022	1	1	0	0	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0023	1	0	1	0	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0024	1	0	1	0	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0025	1	0	0	0	0	1	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0026	1	0	1	0	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0027	1	0	0	1	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0028	1	0	0	1	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0029	1	0	1	0	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0030	1	0	0	1	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0031	1	1	0	0	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0032	1	0	0	1	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0033	1	0	0	1	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0034	1	0	1	0	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0035	1	0	0	1	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0036	1	0	0	1	0	0	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	g0037	1	0	0	1	0	0	YPEL3	chr16	30087314	30101213
YPEL4_chr11_57640087_57654912	0/0	g0000	1	0	0	0	0	1	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/1	g0001	135	25	30	56	4	19	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	1/0	g0002	73	12	25	21	5	9	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0003	46	9	10	16	4	7	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0004	15	13	1	0	0	1	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0005	15	11	0	4	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0006	5	5	0	0	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0007	5	5	0	0	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0008	5	5	0	0	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0009	3	3	0	0	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0010	2	0	0	0	0	2	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0011	2	0	0	2	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0012	2	2	0	0	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0013	1	0	0	1	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0014	1	1	0	0	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0015	1	0	0	1	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0016	1	0	0	1	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0017	1	0	0	1	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0018	1	0	1	0	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0019	1	0	0	0	0	1	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0020	1	0	0	1	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0021	1	0	0	0	1	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0022	1	0	0	1	0	0	YPEL4	chr11	57640087	57654912