JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
YPEL4_chr11_57640087_57654912	0/0	g0023	1	0	0	1	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0024	1	0	1	0	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0025	1	1	0	0	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0026	1	1	0	0	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0027	1	1	0	0	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0028	1	1	0	0	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0029	1	1	0	0	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0030	1	0	1	0	0	0	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	g0031	1	0	1	0	0	0	YPEL4	chr11	57640087	57654912
YPEL5_chr2_30142007_30165533	0/0	g0001	64	1	7	48	0	8	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/1	g0002	53	5	9	26	4	8	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0003	35	0	8	25	1	1	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0004	29	3	9	14	1	2	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0005	27	13	1	9	0	4	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0006	22	19	3	0	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	1/0	g0007	18	2	7	4	2	2	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0008	16	2	3	0	3	8	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0009	11	0	0	11	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0010	9	0	0	9	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0011	5	5	0	0	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0012	5	4	0	1	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0013	5	0	3	0	0	2	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0014	4	4	0	0	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0015	4	0	2	2	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0016	4	0	0	4	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0017	3	0	2	0	0	1	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0018	3	0	0	3	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0019	3	3	0	0	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0020	2	2	0	0	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0021	2	1	1	0	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0022	2	0	0	2	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0023	2	0	0	0	0	2	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0024	2	2	0	0	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0025	2	2	0	0	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0026	2	0	0	0	0	2	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0027	2	2	0	0	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0028	2	0	1	0	1	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0029	2	0	1	0	1	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0030	2	0	0	2	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0031	2	0	0	2	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0032	2	0	0	2	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0033	2	0	0	2	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0034	1	1	0	0	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0035	1	1	0	0	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0036	1	1	0	0	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0037	1	1	0	0	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0038	1	1	0	0	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0039	1	1	0	0	0	0	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0040	1	0	0	0	0	1	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	g0041	1	1	0	0	0	0	YPEL5	chr2	30142007	30165533