JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
YTHDC2_chr5_113508694_113600284	0/0	g0299	1	0	0	1	0	0	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	g0300	1	0	0	1	0	0	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	g0301	1	0	0	1	0	0	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	g0302	1	0	0	1	0	0	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	g0303	1	0	1	0	0	0	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	g0304	1	0	0	0	0	1	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	g0305	1	0	1	0	0	0	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	g0306	1	0	0	1	0	0	YTHDC2	chr5	113508694	113600284
YTHDF1_chr20_63190429_63221131	0/0	g0001	40	0	4	31	0	5	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0002	18	1	5	5	2	5	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0003	14	0	1	13	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0004	11	10	1	0	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0005	9	0	1	8	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0006	9	0	3	4	1	1	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0007	8	0	1	6	0	1	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0008	7	3	2	1	0	1	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0009	6	6	0	0	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0010	6	0	5	0	1	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0011	5	1	1	1	0	2	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0012	5	1	3	1	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0013	5	5	0	0	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0014	5	0	0	5	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/1	g0015	4	0	0	0	1	2	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0016	4	0	0	4	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0017	3	0	0	3	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0018	3	0	0	3	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0019	3	0	3	0	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0020	3	0	3	0	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0021	3	1	1	1	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0022	3	0	0	1	1	1	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0023	3	0	0	3	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0024	3	0	0	3	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0025	3	3	0	0	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0026	3	3	0	0	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0027	3	3	0	0	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0028	2	0	1	0	1	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0029	2	0	1	0	1	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0030	2	0	0	0	0	2	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0031	2	0	0	0	0	2	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0032	2	0	1	1	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0033	2	0	1	0	1	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0034	2	0	0	2	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0035	2	0	0	2	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0036	2	0	0	2	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0037	2	0	0	2	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0038	2	0	0	0	0	2	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0039	2	0	2	0	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0040	2	2	0	0	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0041	2	2	0	0	0	0	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	g0042	2	2	0	0	0	0	YTHDF1	chr20	63190429	63221131