JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
YTHDF3_chr8_63163621_63217786	0/0	g0319	1	0	0	1	0	0	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	g0320	1	0	0	1	0	0	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	g0321	1	0	0	1	0	0	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	g0322	1	0	0	1	0	0	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	g0323	1	0	0	1	0	0	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	g0324	1	0	0	1	0	0	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	g0325	1	0	0	1	0	0	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	g0326	1	1	0	0	0	0	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	g0327	1	1	0	0	0	0	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	g0328	1	1	0	0	0	0	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	g0329	1	1	0	0	0	0	YTHDF3	chr8	63163621	63217786
YWHAB_chr20_44880705_44913532	0/0	g0001	50	5	14	29	1	1	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	1/0	g0002	35	4	10	14	4	2	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0003	26	3	2	14	1	6	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0004	17	9	3	0	3	2	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0005	17	0	2	14	0	1	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0006	11	0	4	6	0	1	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0007	7	0	0	7	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0008	7	0	3	1	1	2	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0009	7	2	1	3	0	1	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0010	5	0	0	5	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0011	5	0	5	0	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0012	5	5	0	0	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0013	5	1	0	3	0	1	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0014	5	4	1	0	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0015	5	0	1	4	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0016	4	4	0	0	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0017	4	1	2	1	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0018	4	0	0	4	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0019	4	0	0	0	1	3	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0020	4	0	0	4	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0021	3	0	3	0	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0022	3	0	3	0	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0023	3	3	0	0	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0024	3	3	0	0	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0025	2	0	0	2	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0026	2	2	0	0	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0027	2	2	0	0	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0028	2	0	0	2	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/1	g0029	2	0	0	0	1	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0030	2	0	2	0	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0031	2	2	0	0	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0032	2	0	1	1	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0033	2	0	0	2	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0034	2	2	0	0	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0035	2	0	2	0	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0036	2	0	1	0	0	1	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0037	2	0	0	2	0	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0038	2	0	1	0	1	0	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	g0039	2	2	0	0	0	0	YWHAB	chr20	44880705	44913532