JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
YWHAE_chr17_1339275_1405222	0/0	g0359	1	0	0	1	0	0	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	g0360	1	1	0	0	0	0	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	g0361	1	1	0	0	0	0	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	g0362	1	1	0	0	0	0	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	g0363	1	1	0	0	0	0	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	g0364	1	0	0	1	0	0	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	g0365	1	1	0	0	0	0	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	g0366	1	1	0	0	0	0	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	g0367	1	1	0	0	0	0	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	g0368	1	1	0	0	0	0	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	g0369	1	1	0	0	0	0	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	g0370	1	1	0	0	0	0	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	g0371	1	1	0	0	0	0	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	g0372	1	1	0	0	0	0	YWHAE	chr17	1339275	1405222
YWHAG_chr7_76321799_76363991	0/0	g0001	19	0	10	7	0	2	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0002	5	0	0	5	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0003	4	0	0	4	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0004	3	0	0	3	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0005	3	0	0	3	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0006	3	0	0	2	1	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0007	3	3	0	0	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0008	3	0	0	3	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0009	3	0	0	3	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0010	3	0	2	1	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0011	3	3	0	0	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0012	3	0	1	2	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0013	3	0	0	3	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0014	3	0	0	3	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0015	2	0	2	0	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0016	2	0	1	1	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0017	2	1	0	0	1	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0018	2	0	1	0	0	1	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0019	2	0	0	2	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0020	2	0	1	1	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0021	2	0	0	2	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0022	2	0	0	0	0	2	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0023	2	0	0	2	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0024	2	0	2	0	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0025	2	0	1	1	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0026	2	0	0	0	2	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0027	2	0	2	0	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0028	2	0	0	2	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0029	2	0	0	2	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0030	1	1	0	0	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0031	1	0	0	1	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0032	1	0	0	1	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0033	1	0	0	1	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0034	1	1	0	0	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0035	1	1	0	0	0	0	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	g0036	1	1	0	0	0	0	YWHAG	chr7	76321799	76363991