JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
YY1_chr14_100234144_100287788	0/0	g0320	1	1	0	0	0	0	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0321	1	0	0	0	0	1	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0322	1	0	0	1	0	0	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0323	1	0	1	0	0	0	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0324	1	0	0	1	0	0	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0325	1	1	0	0	0	0	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0326	1	0	0	0	0	1	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0327	1	0	1	0	0	0	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0328	1	0	1	0	0	0	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0329	1	0	1	0	0	0	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0330	1	0	0	0	0	1	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0331	1	0	1	0	0	0	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0332	1	0	0	0	1	0	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0333	1	0	0	0	1	0	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0334	1	0	1	0	0	0	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0335	1	1	0	0	0	0	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0336	1	0	1	0	0	0	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0337	1	0	0	1	0	0	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0338	1	0	0	1	0	0	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0339	1	1	0	0	0	0	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	g0340	1	0	0	0	1	0	YY1	chr14	100234144	100287788
YY2_chrX_21850987_21863740	1/1	g0000	324	76	50	154	11	31	YY2	chrX	21850987	21863740
ZACN_chr17_76074182_76087806	1/0	g0001	188	40	34	94	8	11	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/1	g0002	130	4	26	75	7	17	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0003	30	26	4	0	0	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0004	10	5	3	0	0	2	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0005	4	3	1	0	0	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0006	3	2	1	0	0	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0007	3	3	0	0	0	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0008	3	0	0	3	0	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0009	3	3	0	0	0	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0010	2	2	0	0	0	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0011	1	1	0	0	0	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0012	1	0	0	1	0	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0013	1	0	0	0	1	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0014	1	0	0	0	0	1	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0015	1	0	0	1	0	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0016	1	0	0	0	0	1	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0017	1	0	0	0	0	1	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0018	1	0	1	0	0	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0019	1	0	0	0	0	1	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0020	1	1	0	0	0	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0021	1	0	0	1	0	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0022	1	0	1	0	0	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0023	1	0	1	0	0	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0024	1	1	0	0	0	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0025	1	0	0	1	0	0	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	g0026	1	1	0	0	0	0	ZACN	chr17	76074182	76087806
ZAN_chr7_100728595_100802797	0/0	g0001	2	2	0	0	0	0	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	g0002	1	1	0	0	0	0	ZAN	chr7	100728595	100802797