JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BRI3_chr7_98276686_98296545	0/0	g0105	1	1	0	0	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0106	1	0	0	1	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0107	1	0	0	1	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0108	1	1	0	0	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0109	1	1	0	0	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0110	1	1	0	0	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0111	1	1	0	0	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0112	1	0	0	0	0	1	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0113	1	0	0	0	0	1	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0114	1	1	0	0	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0115	1	0	0	0	0	1	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0116	1	1	0	0	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0117	1	1	0	0	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0118	1	0	0	1	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0119	1	1	0	0	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0120	1	1	0	0	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0121	1	0	0	0	1	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0122	1	0	1	0	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0123	1	1	0	0	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0124	1	1	0	0	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0125	1	0	0	0	0	1	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0126	1	0	0	0	0	1	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0127	1	0	0	0	0	1	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0128	1	0	0	1	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0129	1	1	0	0	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0130	1	1	0	0	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0131	1	1	0	0	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0132	1	1	0	0	0	0	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	g0133	1	1	0	0	0	0	BRI3	chr7	98276686	98296545
BRICD5_chr16_2204253_2215863	0/1	g0001	145	1	31	81	8	23	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0002	96	22	20	40	2	12	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0003	49	29	4	11	2	3	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0004	23	14	3	5	0	1	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0005	17	3	12	0	1	1	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0006	14	5	7	0	2	0	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	1/0	g0007	11	0	0	10	0	0	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0008	11	4	2	2	3	0	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0009	7	7	0	0	0	0	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0010	6	0	0	6	0	0	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0011	6	0	0	6	0	0	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0012	5	0	0	4	0	1	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0013	5	0	0	5	0	0	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0014	4	4	0	0	0	0	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0015	4	0	0	4	0	0	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0016	3	0	2	0	0	1	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0017	3	2	1	0	0	0	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0018	2	0	0	0	0	2	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0019	1	0	0	1	0	0	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0020	1	1	0	0	0	0	BRICD5	chr16	2204253	2215863
BRICD5_chr16_2204253_2215863	0/0	g0021	1	0	0	1	0	0	BRICD5	chr16	2204253	2215863