JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZAR1L_chr13_32298699_32320363	0/0	g0160	1	1	0	0	0	0	ZAR1L	chr13	32298699	32320363
ZAR1_chr4_48485252_48499389	0/1	g0001	135	9	30	76	8	11	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0002	99	5	14	59	4	17	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0003	41	37	2	0	0	2	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0004	30	2	10	12	0	6	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0005	14	14	0	0	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0006	13	2	3	2	2	4	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0007	12	9	0	3	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	1/0	g0008	10	8	1	0	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0009	6	5	1	0	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0010	6	0	6	0	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0011	3	0	1	0	0	2	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0012	3	0	0	3	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0013	2	0	0	2	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0014	2	0	1	1	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0015	2	2	0	0	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0016	2	2	0	0	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0017	1	1	0	0	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0018	1	1	0	0	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0019	1	0	0	0	0	1	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0020	1	0	1	0	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0021	1	0	0	0	0	1	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0022	1	0	0	1	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0023	1	0	0	1	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0024	1	0	0	1	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0025	1	0	1	0	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0026	1	0	0	1	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0027	1	0	0	1	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0028	1	1	0	0	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0029	1	0	1	0	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0030	1	0	0	1	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0031	1	0	0	1	0	0	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	g0032	1	0	0	1	0	0	ZAR1	chr4	48485252	48499389
ZBBX_chr3_167234843_167385297	0/0	g0001	2	0	0	0	2	0	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	g0002	2	0	0	2	0	0	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	g0003	2	2	0	0	0	0	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	g0004	1	0	0	0	0	1	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	g0005	1	0	1	0	0	0	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	g0006	1	0	0	1	0	0	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	g0007	1	0	0	0	1	0	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	g0008	1	0	1	0	0	0	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	g0009	1	0	0	0	0	1	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	g0010	1	0	0	0	0	1	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	g0011	1	0	0	0	0	1	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	g0012	1	0	0	0	1	0	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	g0013	1	0	1	0	0	0	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	g0014	1	0	1	0	0	0	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	g0015	1	0	1	0	0	0	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	g0016	1	0	1	0	0	0	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	g0017	1	0	0	1	0	0	ZBBX	chr3	167234843	167385297