JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZBED1_chrX_2481435_2505976	0/0	g0131	1	0	1	0	0	0	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	g0132	1	0	0	1	0	0	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	g0133	1	0	0	1	0	0	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	g0134	1	0	0	0	0	1	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	g0135	1	0	0	0	0	1	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	g0136	1	0	0	0	0	1	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	g0137	1	0	0	1	0	0	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	g0138	1	0	1	0	0	0	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	g0139	1	0	0	0	0	1	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	g0140	1	0	0	1	0	0	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	g0141	1	0	0	0	0	1	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	g0142	1	0	1	0	0	0	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	g0143	1	0	0	1	0	0	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	g0144	1	0	0	1	0	0	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	g0145	1	1	0	0	0	0	ZBED1	chrX	2481435	2505976
ZBED2_chr3_111587900_111600346	0/1	g0001	314	36	62	169	13	33	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	1/0	g0002	40	25	7	3	1	3	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0003	22	3	3	15	0	1	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0004	20	0	3	8	0	9	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0005	15	15	0	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0006	5	5	0	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0007	4	0	0	4	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0008	2	2	0	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0009	2	2	0	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0010	1	0	0	0	0	1	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0011	1	1	0	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0012	1	1	0	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0013	1	1	0	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0014	1	1	0	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0015	1	0	1	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0016	1	0	1	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0017	1	0	1	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0018	1	0	1	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0019	1	0	1	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0020	1	1	0	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0021	1	0	1	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0022	1	0	0	1	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0023	1	0	1	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0024	1	1	0	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0025	1	1	0	0	0	0	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0026	1	0	0	0	0	1	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	g0027	1	1	0	0	0	0	ZBED2	chr3	111587900	111600346
ZBED3_chr5_77067072_77092285	0/0	g0001	12	0	1	10	0	1	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	g0002	10	0	0	9	0	1	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	g0003	10	0	8	2	0	0	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	g0004	8	0	0	8	0	0	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	g0005	6	0	0	5	0	1	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	g0006	6	0	0	6	0	0	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	g0007	5	0	0	5	0	0	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	g0008	5	0	0	5	0	0	ZBED3	chr5	77067072	77092285