JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZBTB46_chr20_63738670_63836264	0/0	g0313	1	1	0	0	0	0	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	g0314	1	1	0	0	0	0	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	g0315	1	1	0	0	0	0	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	g0316	1	1	0	0	0	0	ZBTB46	chr20	63738670	63836264
ZBTB47_chr3_42648697_42672580	1/1	g0001	88	12	11	42	5	16	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0002	66	1	8	47	2	8	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0003	59	1	22	31	1	4	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0004	19	18	1	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0005	16	1	1	13	0	1	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0006	13	4	1	2	0	6	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0007	7	0	6	0	1	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0008	7	0	4	1	2	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0009	7	5	2	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0010	6	5	1	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0011	6	0	1	3	1	1	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0012	6	5	1	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0013	5	0	0	5	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0014	4	4	0	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0015	4	4	0	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0016	4	2	1	0	0	1	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0017	4	0	0	4	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0018	4	0	3	0	1	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0019	4	4	0	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0020	4	0	0	4	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0021	3	0	3	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0022	3	3	0	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0023	3	2	1	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0024	3	3	0	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0025	3	0	0	3	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0026	2	2	0	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0027	2	0	2	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0028	2	0	0	2	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0029	2	1	1	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0030	2	2	0	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0031	2	2	0	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0032	2	1	1	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0033	2	0	0	2	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0034	2	1	1	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0035	1	0	0	1	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0036	1	0	0	1	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0037	1	0	1	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0038	1	0	0	1	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0039	1	0	1	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0040	1	0	0	1	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0041	1	0	0	1	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0042	1	0	0	1	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0043	1	0	1	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0044	1	1	0	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0045	1	0	1	0	0	0	ZBTB47	chr3	42648697	42672580
ZBTB47_chr3_42648697_42672580	0/0	g0046	1	0	0	0	1	0	ZBTB47	chr3	42648697	42672580