JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZBTB8OS_chr1_32615820_32655550	0/0	g0299	1	0	0	1	0	0	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	g0300	1	0	1	0	0	0	ZBTB8OS	chr1	32615820	32655550
ZBTB8OS_chr1_32615820_32655550	0/0	g0301	1	1	0	0	0	0	ZBTB8OS	chr1	32615820	32655550
ZBTB9_chr6_33449576_33462544	0/1	g0001	335	82	68	140	14	30	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	g0002	20	16	0	2	0	2	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	g0003	17	0	9	5	1	2	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	g0004	2	0	1	0	1	0	ZBTB9	chr6	33449576	33462544
ZBTB9_chr6_33449576_33462544	0/0	g0005	1	0	0	1	0	0	ZBTB9	chr6	33449576	33462544
ZC2HC1A_chr8_78661089_78724765	0/0	g0001	10	0	7	2	0	1	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0002	8	0	0	6	1	1	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0003	7	0	2	2	2	1	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0004	7	0	0	6	0	1	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0005	5	4	1	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0006	4	1	2	0	1	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0007	3	0	2	0	0	1	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0008	3	0	2	0	0	1	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0009	3	0	0	3	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0010	2	2	0	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	1/0	g0011	2	0	0	0	1	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0012	2	2	0	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0013	2	0	2	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0014	2	2	0	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0015	2	2	0	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0016	2	2	0	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0017	2	1	1	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0018	2	2	0	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0019	2	0	1	1	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0020	2	0	0	0	2	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0021	2	0	0	2	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0022	2	0	0	2	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0023	2	2	0	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0024	2	0	0	0	0	2	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0025	2	0	2	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0026	2	0	0	2	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0027	2	1	0	0	1	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0028	2	2	0	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0029	2	2	0	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0030	2	1	0	0	1	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0031	2	0	0	0	2	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0032	2	0	0	2	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0033	2	2	0	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0034	2	2	0	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0035	2	2	0	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0036	1	1	0	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0037	1	1	0	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0038	1	1	0	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0039	1	1	0	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0040	1	0	0	1	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0041	1	0	1	0	0	0	ZC2HC1A	chr8	78661089	78724765
ZC2HC1A_chr8_78661089_78724765	0/0	g0042	1	1	0	0	0	0	ZC2HC1A	chr8	78661089	78724765