JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZC2HC1B_chr6_143859474_143943343	0/0	g0298	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0299	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0300	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0301	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0302	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0303	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0304	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0305	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0306	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0307	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0308	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0309	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0310	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0311	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0312	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0313	1	0	1	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0314	1	0	1	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0315	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0316	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0317	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0318	1	0	1	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0319	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0320	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0321	1	0	1	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0322	1	1	0	0	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0323	1	0	0	1	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0324	1	0	0	1	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1B_chr6_143859474_143943343	0/0	g0325	1	0	0	1	0	0	ZC2HC1B	chr6	143859474	143943343
ZC2HC1C_chr14_75064641_75084988	0/1	g0001	141	16	24	81	5	14	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0002	98	25	24	21	6	22	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0003	56	1	9	41	0	5	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0004	12	12	0	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0005	8	1	5	0	0	2	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0006	7	7	0	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0007	6	5	1	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0008	6	2	2	0	1	1	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0009	5	0	0	5	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	1/0	g0010	5	2	2	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0011	4	3	1	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0012	4	3	1	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0013	4	0	0	4	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0014	3	0	0	3	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0015	3	1	0	2	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0016	2	0	0	2	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0017	2	0	2	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0018	2	2	0	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0019	2	2	0	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0020	2	1	0	0	0	1	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0021	2	2	0	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0022	1	0	0	1	0	0	ZC2HC1C	chr14	75064641	75084988