JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZC2HC1C_chr14_75064641_75084988	0/0	g0023	1	0	0	1	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0024	1	1	0	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0025	1	0	1	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0026	1	0	0	1	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0027	1	1	0	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0028	1	0	0	1	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0029	1	0	0	0	0	1	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0030	1	1	0	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0031	1	0	1	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0032	1	1	0	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0033	1	1	0	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0034	1	0	0	0	0	1	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0035	1	0	0	1	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0036	1	0	0	0	0	1	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0037	1	0	1	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0038	1	0	0	1	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0039	1	1	0	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0040	1	0	0	1	0	0	ZC2HC1C	chr14	75064641	75084988
ZC2HC1C_chr14_75064641_75084988	0/0	g0041	1	1	0	0	0	0	ZC2HC1C	chr14	75064641	75084988
ZC3H10_chr12_56113266_56132514	1/1	g0001	258	36	61	116	14	29	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	g0002	61	45	8	2	2	4	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	g0003	8	0	0	8	0	0	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	g0004	6	0	0	6	0	0	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	g0005	4	0	0	4	0	0	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	g0006	3	3	0	0	0	0	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	g0007	2	2	0	0	0	0	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	g0008	1	0	0	1	0	0	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	g0009	1	0	0	0	0	1	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	g0010	1	0	0	1	0	0	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	g0011	1	0	1	0	0	0	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	g0012	1	0	0	1	0	0	ZC3H10	chr12	56113266	56132514
ZC3H10_chr12_56113266_56132514	0/0	g0013	1	0	0	1	0	0	ZC3H10	chr12	56113266	56132514
ZC3H11A_chr1_203790623_203859124	0/0	g0001	4	0	0	4	0	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	g0002	3	0	0	3	0	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	1/0	g0003	3	2	0	0	0	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	g0004	2	2	0	0	0	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	g0005	2	0	2	0	0	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	g0006	2	0	0	2	0	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	g0007	2	0	1	0	1	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	g0008	2	2	0	0	0	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	g0009	2	0	2	0	0	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	g0010	2	0	0	2	0	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	g0011	1	1	0	0	0	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	g0012	1	0	0	0	1	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	g0013	1	1	0	0	0	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	g0014	1	1	0	0	0	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	g0015	1	1	0	0	0	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	g0016	1	0	1	0	0	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	g0017	1	1	0	0	0	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	g0018	1	0	0	1	0	0	ZC3H11A	chr1	203790623	203859124