JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZC3H11A_chr1_203790623_203859124	0/0	g0369	1	1	0	0	0	0	ZC3H11A	chr1	203790623	203859124
ZC3H11A_chr1_203790623_203859124	0/0	g0370	1	1	0	0	0	0	ZC3H11A	chr1	203790623	203859124
ZC3H11B_chr1_219603012_219618105	0/1	g0001	150	9	12	108	4	16	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0002	113	4	35	57	6	11	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	1/0	g0003	72	11	16	35	2	7	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0004	29	21	5	0	2	1	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0005	11	10	1	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0006	9	9	0	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0007	7	0	0	7	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0008	6	0	1	0	3	2	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0009	6	6	0	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0010	6	6	0	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0011	5	5	0	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0012	4	4	0	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0013	2	2	0	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0014	2	0	0	2	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0015	1	1	0	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0016	1	1	0	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0017	1	0	0	0	1	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0018	1	0	0	1	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0019	1	0	0	1	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0020	1	0	1	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0021	1	1	0	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0022	1	0	0	0	0	1	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0023	1	0	0	1	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0024	1	1	0	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0025	1	0	1	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0026	1	0	1	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0027	1	1	0	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0028	1	0	0	0	0	1	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0029	1	1	0	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0030	1	1	0	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0031	1	0	0	0	0	1	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0032	1	1	0	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0033	1	1	0	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0034	1	1	0	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0035	1	0	0	0	0	1	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0036	1	0	1	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0037	1	0	0	1	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0038	1	0	0	0	0	1	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0039	1	1	0	0	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11B_chr1_219603012_219618105	0/0	g0040	1	0	0	1	0	0	ZC3H11B	chr1	219603012	219618105
ZC3H11C_chr6_65296476_65311574	1/1	g0001	399	63	69	206	18	41	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	g0002	29	19	3	0	0	7	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	g0003	7	7	0	0	0	0	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	g0004	5	5	0	0	0	0	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	g0005	1	1	0	0	0	0	ZC3H11C	chr6	65296476	65311574
ZC3H11C_chr6_65296476_65311574	0/0	g0006	1	1	0	0	0	0	ZC3H11C	chr6	65296476	65311574
ZC3H12A_chr1_37469580_37489377	0/1	g0001	99	44	11	19	5	19	ZC3H12A	chr1	37469580	37489377
ZC3H12A_chr1_37469580_37489377	0/0	g0002	92	9	20	55	2	6	ZC3H12A	chr1	37469580	37489377