JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BRIP1_chr17_61674139_61868528	0/0	g0264	1	1	0	0	0	0	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	g0265	1	1	0	0	0	0	BRIP1	chr17	61674139	61868528
BRIX1_chr5_34910711_34930996	1/0	g0001	55	7	1	43	0	3	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/1	g0002	54	5	9	33	1	5	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0003	31	1	11	11	2	6	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0004	21	1	5	9	2	4	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0005	12	1	3	5	0	3	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0006	12	10	2	0	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0007	12	0	4	8	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0008	10	9	1	0	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0009	10	0	0	10	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0010	8	0	3	1	1	3	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0011	8	0	4	1	3	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0012	8	2	2	4	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0013	7	6	1	0	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0014	4	0	0	4	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0015	4	4	0	0	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0016	4	0	1	3	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0017	4	0	3	0	1	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0018	4	4	0	0	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0019	3	0	0	3	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0020	3	3	0	0	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0021	3	3	0	0	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0022	3	2	0	1	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0023	3	0	2	1	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0024	3	0	2	0	0	1	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0025	3	0	2	1	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0026	3	1	0	0	1	1	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0027	3	0	2	0	0	1	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0028	3	0	0	1	0	2	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0029	3	0	1	2	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0030	3	1	0	2	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0031	2	2	0	0	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0032	2	0	2	0	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0033	2	0	1	1	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0034	2	0	0	0	2	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0035	2	1	0	1	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0036	2	0	0	2	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0037	2	0	1	0	1	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0038	2	2	0	0	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0039	2	1	0	0	0	1	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0040	2	0	0	2	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0041	2	0	0	2	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0042	2	0	0	2	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0043	2	0	0	2	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0044	2	2	0	0	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0045	2	1	0	1	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0046	2	2	0	0	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0047	2	0	0	2	0	0	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	g0048	2	1	1	0	0	0	BRIX1	chr5	34910711	34930996