JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZC3H14_chr14_88558037_88632596	0/0	g0286	1	0	0	0	0	1	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	g0287	1	0	0	1	0	0	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	g0288	1	1	0	0	0	0	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	g0289	1	1	0	0	0	0	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	g0290	1	0	0	1	0	0	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	g0291	1	0	1	0	0	0	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	g0292	1	0	1	0	0	0	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	g0293	1	0	1	0	0	0	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	g0294	1	0	1	0	0	0	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	g0295	1	1	0	0	0	0	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	g0296	1	1	0	0	0	0	ZC3H14	chr14	88558037	88632596
ZC3H14_chr14_88558037_88632596	0/0	g0297	1	0	0	1	0	0	ZC3H14	chr14	88558037	88632596
ZC3H15_chr2_186481260_186514361	0/0	g0001	65	6	17	31	6	5	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0002	41	0	6	35	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/1	g0003	28	12	7	4	2	2	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0004	27	1	7	14	0	5	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0005	15	10	3	0	2	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0006	12	0	4	7	0	1	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0007	8	0	3	3	0	2	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0008	8	8	0	0	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0009	8	0	0	8	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0010	7	7	0	0	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0011	6	5	1	0	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0012	5	4	0	1	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0013	4	0	3	0	1	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0014	4	1	3	0	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0015	4	4	0	0	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0016	4	0	0	4	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0017	4	0	0	4	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0018	3	0	0	3	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0019	3	0	0	3	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0020	3	0	0	0	0	3	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0021	3	1	0	0	0	2	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0022	3	0	0	3	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0023	3	0	2	0	1	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0024	3	0	2	1	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0025	3	3	0	0	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0026	2	0	0	2	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0027	2	0	0	2	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0028	2	2	0	0	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0029	2	1	1	0	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0030	2	2	0	0	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0031	2	2	0	0	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0032	2	0	0	2	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0033	2	1	1	0	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0034	2	0	2	0	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0035	2	2	0	0	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0036	2	2	0	0	0	0	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0037	2	0	0	0	0	2	ZC3H15	chr2	186481260	186514361
ZC3H15_chr2_186481260_186514361	0/0	g0038	2	0	2	0	0	0	ZC3H15	chr2	186481260	186514361