JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZC3H4_chr19_47059187_47118776	0/0	g0313	1	0	1	0	0	0	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	g0314	1	1	0	0	0	0	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	g0315	1	1	0	0	0	0	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	g0316	1	1	0	0	0	0	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	g0317	1	1	0	0	0	0	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	g0318	1	1	0	0	0	0	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	g0319	1	0	0	1	0	0	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	g0320	1	1	0	0	0	0	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	g0321	1	0	0	0	0	1	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	g0322	1	0	0	1	0	0	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	g0323	1	0	1	0	0	0	ZC3H4	chr19	47059187	47118776
ZC3H4_chr19_47059187_47118776	0/0	g0324	1	0	1	0	0	0	ZC3H4	chr19	47059187	47118776
ZC3H6_chr2_112270597_112345059	0/1	g0001	27	0	3	17	2	4	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0002	13	0	2	11	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0003	9	0	3	5	0	1	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0004	8	0	2	5	0	1	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0005	7	0	0	7	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0006	5	0	0	5	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0007	5	4	1	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0008	4	0	0	4	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0009	3	0	3	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0010	3	2	1	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0011	3	0	3	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0012	3	0	0	3	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0013	3	2	1	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0014	2	0	1	0	0	1	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0015	2	1	1	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0016	2	0	2	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0017	2	0	0	1	0	1	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0018	2	0	2	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0019	2	0	0	2	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0020	2	0	1	1	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0021	2	0	0	1	0	1	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0022	2	0	0	2	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0023	2	0	0	2	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0024	2	2	0	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0025	2	1	1	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0026	2	0	0	2	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0027	2	1	1	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0028	2	0	2	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0029	2	0	0	2	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0030	2	0	2	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0031	2	2	0	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0032	2	0	0	2	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0033	2	1	1	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0034	2	0	0	0	0	2	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0035	2	2	0	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0036	2	2	0	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0037	2	2	0	0	0	0	ZC3H6	chr2	112270597	112345059
ZC3H6_chr2_112270597_112345059	0/0	g0038	2	2	0	0	0	0	ZC3H6	chr2	112270597	112345059