JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BRK1_chr3_10110675_10132190	0/0	g0151	1	0	0	1	0	0	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	g0152	1	0	0	0	0	1	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	g0153	1	0	0	1	0	0	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	g0154	1	1	0	0	0	0	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	g0155	1	0	0	1	0	0	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	g0156	1	0	1	0	0	0	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	g0157	1	0	0	1	0	0	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	g0158	1	0	0	1	0	0	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	g0159	1	0	1	0	0	0	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	g0160	1	0	1	0	0	0	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	g0161	1	0	1	0	0	0	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	g0162	1	0	0	1	0	0	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	g0163	1	0	0	0	0	1	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	g0164	1	0	1	0	0	0	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	g0165	1	1	0	0	0	0	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	g0166	1	0	0	1	0	0	BRK1	chr3	10110675	10132190
BRME1_chr19_13877348_13911117	0/0	g0001	48	5	9	21	5	8	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0002	13	0	4	5	0	4	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0003	12	1	1	9	0	1	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0004	5	4	1	0	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0005	5	0	2	0	3	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0006	5	0	3	1	1	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0007	4	0	0	4	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0008	4	4	0	0	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0009	4	0	1	0	3	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0010	4	0	0	4	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0011	3	0	0	3	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0012	3	3	0	0	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0013	3	3	0	0	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0014	3	0	1	0	0	2	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0015	3	0	0	3	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0016	2	0	1	0	0	1	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0017	2	1	1	0	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0018	2	0	0	2	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0019	2	2	0	0	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0020	2	0	0	2	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0021	2	0	0	0	2	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0022	2	0	0	0	0	2	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0023	2	2	0	0	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0024	2	2	0	0	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0025	2	0	0	0	0	2	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0026	2	0	2	0	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0027	2	0	0	2	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0028	2	0	0	2	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0029	2	0	0	2	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0030	1	0	0	1	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0031	1	1	0	0	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0032	1	1	0	0	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0033	1	1	0	0	0	0	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	g0034	1	0	0	0	0	1	BRME1	chr19	13877348	13911117