JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	genename	chr	start	end
ZC3H7A_chr16_11745597_11802258	0/0	g0357	1	1	0	0	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0358	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0359	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0360	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0361	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0362	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0363	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0364	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0365	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0366	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0367	1	1	0	0	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0368	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0369	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0370	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0371	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0372	1	1	0	0	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0373	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0374	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0375	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0376	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0377	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0378	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0379	1	1	0	0	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0380	1	1	0	0	ZC3H7A	chr16	11745597	11802258
ZC3H7A_chr16_11745597_11802258	0/0	g0381	1	0	0	1	ZC3H7A	chr16	11745597	11802258
ZC3H7B_chr22_41296525_41365147	0/0	g0001	4	0	0	4	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0002	3	2	0	1	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0003	2	0	0	2	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0004	2	0	0	2	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0005	2	2	0	0	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0006	2	0	0	2	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0007	2	0	2	0	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0008	1	1	0	0	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0009	1	1	0	0	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0010	1	1	0	0	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0011	1	1	0	0	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0012	1	1	0	0	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0013	1	1	0	0	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0014	1	1	0	0	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0015	1	1	0	0	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0016	1	1	0	0	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0017	1	1	0	0	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0018	1	1	0	0	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0019	1	1	0	0	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0020	1	1	0	0	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0021	1	1	0	0	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0022	1	0	0	1	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0023	1	0	0	1	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0024	1	0	0	1	ZC3H7B	chr22	41296525	41365147
ZC3H7B_chr22_41296525_41365147	0/0	g0025	1	1	0	0	ZC3H7B	chr22	41296525	41365147