JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZC3H8_chr2_112206529_112260042	0/0	g0261	1	1	0	0	0	0	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	g0262	1	1	0	0	0	0	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	g0263	1	1	0	0	0	0	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	g0264	1	1	0	0	0	0	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	g0265	1	1	0	0	0	0	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	g0266	1	1	0	0	0	0	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	g0267	1	0	0	0	0	1	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	g0268	1	0	0	0	0	1	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	g0269	1	0	0	1	0	0	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	g0270	1	0	0	1	0	0	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	g0271	1	1	0	0	0	0	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	g0272	1	1	0	0	0	0	ZC3H8	chr2	112206529	112260042
ZC3H8_chr2_112206529_112260042	0/0	g0273	1	1	0	0	0	0	ZC3H8	chr2	112206529	112260042
ZC3HAV1L_chr7_139020706_139041042	1/1	g0001	78	8	16	38	5	9	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0002	43	10	10	16	3	4	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0003	40	1	0	39	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0004	37	0	7	29	0	1	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0005	32	3	10	10	2	7	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0006	11	5	0	1	0	5	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0007	11	0	0	11	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0008	8	0	0	8	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0009	8	3	2	0	2	1	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0010	6	6	0	0	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0011	6	0	0	6	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0012	5	5	0	0	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0013	5	0	0	5	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0014	5	0	2	2	0	1	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0015	5	0	0	5	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0016	4	3	1	0	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0017	3	3	0	0	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0018	3	3	0	0	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0019	3	3	0	0	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0020	3	3	0	0	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0021	3	3	0	0	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0022	3	3	0	0	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0023	3	0	0	3	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0024	2	0	2	0	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0025	2	0	2	0	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0026	2	0	1	0	0	1	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0027	2	2	0	0	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0028	2	0	2	0	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0029	2	2	0	0	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0030	2	2	0	0	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0031	2	0	0	2	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0032	2	0	1	0	1	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0033	2	0	0	2	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0034	2	0	0	2	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0035	2	2	0	0	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0036	2	2	0	0	0	0	ZC3HAV1L	chr7	139020706	139041042
ZC3HAV1L_chr7_139020706_139041042	0/0	g0037	1	0	0	1	0	0	ZC3HAV1L	chr7	139020706	139041042