JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZCCHC17_chr1_31292032_31369936	0/0	g0308	1	1	0	0	0	0	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	g0309	1	1	0	0	0	0	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	g0310	1	1	0	0	0	0	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	g0311	1	1	0	0	0	0	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	g0312	1	0	0	1	0	0	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	g0313	1	0	0	1	0	0	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	g0314	1	0	1	0	0	0	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	g0315	1	0	0	1	0	0	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	g0316	1	0	0	1	0	0	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	g0317	1	0	0	1	0	0	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	g0318	1	0	0	1	0	0	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	g0319	1	0	1	0	0	0	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	g0320	1	0	0	1	0	0	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	g0321	1	0	0	0	0	1	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	g0322	1	0	0	0	0	1	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	g0323	1	0	0	0	0	1	ZCCHC17	chr1	31292032	31369936
ZCCHC17_chr1_31292032_31369936	0/0	g0324	1	0	0	0	0	1	ZCCHC17	chr1	31292032	31369936
ZCCHC18_chrX_104107523_104120842	1/1	g0001	319	74	52	145	13	33	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	g0002	1	0	0	1	0	0	ZCCHC18	chrX	104107523	104120842
ZCCHC18_chrX_104107523_104120842	0/0	g0003	1	0	0	1	0	0	ZCCHC18	chrX	104107523	104120842
ZCCHC24_chr10_79377325_79450624	0/0	g0001	2	0	2	0	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0002	2	2	0	0	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0003	2	0	0	0	2	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0004	2	0	0	0	0	2	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0005	2	0	0	2	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0006	2	0	0	2	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0007	2	0	1	0	1	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0008	2	0	2	0	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0009	2	0	2	0	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0010	2	0	2	0	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0011	2	0	0	2	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0012	1	0	0	1	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0013	1	0	0	1	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0014	1	0	1	0	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0015	1	0	0	1	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0016	1	0	0	1	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0017	1	0	0	1	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0018	1	0	0	1	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0019	1	0	0	1	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0020	1	0	1	0	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0021	1	0	1	0	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0022	1	0	0	1	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0023	1	0	0	1	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0024	1	0	0	1	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0025	1	0	0	1	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0026	1	0	0	1	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0027	1	0	0	1	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0028	1	0	0	1	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0029	1	0	0	1	0	0	ZCCHC24	chr10	79377325	79450624
ZCCHC24_chr10_79377325_79450624	0/0	g0030	1	0	0	1	0	0	ZCCHC24	chr10	79377325	79450624