JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZCCHC7_chr9_37115574_37363149	0/0	g0272	1	1	0	0	0	0	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	g0273	1	1	0	0	0	0	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	g0274	1	1	0	0	0	0	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	g0275	1	0	0	0	0	1	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	g0276	1	1	0	0	0	0	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	1/0	g0277	1	0	0	0	0	0	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	g0278	1	1	0	0	0	0	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	g0279	1	1	0	0	0	0	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	g0280	1	0	0	1	0	0	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	g0281	1	1	0	0	0	0	ZCCHC7	chr9	37115574	37363149
ZCCHC7_chr9_37115574_37363149	0/0	g0282	1	1	0	0	0	0	ZCCHC7	chr9	37115574	37363149
ZCCHC8_chr12_122466600_122505932	0/0	g0001	32	0	4	24	0	4	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/1	g0002	27	0	4	18	2	2	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0003	7	7	0	0	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0004	6	6	0	0	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0005	6	0	1	5	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0006	5	4	1	0	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0007	5	5	0	0	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0008	5	0	2	3	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0009	5	0	3	0	2	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0010	5	1	3	1	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0011	4	0	4	0	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0012	3	0	0	3	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0013	3	0	0	3	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0014	3	3	0	0	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0015	3	0	1	2	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0016	3	0	1	0	0	2	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0017	3	0	2	0	0	1	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0018	3	0	2	0	0	1	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0019	2	2	0	0	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0020	2	0	2	0	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0021	2	0	0	2	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0022	2	0	0	2	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0023	2	0	0	0	0	2	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0024	2	0	0	2	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0025	2	0	0	0	2	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0026	2	0	0	2	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0027	2	0	0	2	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0028	2	0	0	2	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0029	2	0	1	0	0	1	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0030	2	2	0	0	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0031	2	1	0	0	0	1	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0032	2	0	1	0	0	1	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0033	2	1	1	0	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0034	2	0	0	2	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0035	2	0	1	0	1	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0036	2	0	0	0	0	2	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0037	2	0	1	0	1	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0038	2	0	0	2	0	0	ZCCHC8	chr12	122466600	122505932
ZCCHC8_chr12_122466600_122505932	0/0	g0039	2	0	0	2	0	0	ZCCHC8	chr12	122466600	122505932