JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZDHHC11_chr5_790605_855986	0/0	g0259	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0260	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0261	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0262	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0263	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0264	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0265	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0266	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0267	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0268	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0269	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0270	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0271	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0272	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0273	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0274	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0275	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0276	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0277	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0278	1	0	0	1	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0279	1	1	0	0	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0280	1	1	0	0	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0281	1	1	0	0	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0282	1	1	0	0	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0283	1	1	0	0	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0284	1	1	0	0	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0285	1	1	0	0	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0286	1	1	0	0	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0287	1	1	0	0	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0288	1	1	0	0	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0289	1	1	0	0	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0290	1	1	0	0	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0291	1	1	0	0	0	0	ZDHHC11	chr5	790605	855986
ZDHHC11_chr5_790605_855986	0/0	g0292	1	1	0	0	0	0	ZDHHC11	chr5	790605	855986
ZDHHC12_chr9_128715873_128729127	0/1	g0001	197	55	30	88	3	20	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	g0002	68	6	28	13	7	14	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	g0003	25	1	1	18	1	4	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	g0004	17	2	6	5	0	4	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	g0005	7	5	2	0	0	0	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	g0006	7	4	0	3	0	0	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	g0007	6	6	0	0	0	0	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	g0008	6	0	0	6	0	0	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	g0009	4	4	0	0	0	0	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	g0010	3	0	3	0	0	0	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	g0011	3	0	0	3	0	0	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	g0012	3	0	0	3	0	0	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	1/0	g0013	2	1	0	0	0	0	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	g0014	2	1	1	0	0	0	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	g0015	2	2	0	0	0	0	ZDHHC12	chr9	128715873	128729127
ZDHHC12_chr9_128715873_128729127	0/0	g0016	1	0	1	0	0	0	ZDHHC12	chr9	128715873	128729127