JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZDHHC15_chrX_75363427_75528037	0/0	g0231	1	0	1	0	0	0	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	g0232	1	0	1	0	0	0	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	g0233	1	0	0	1	0	0	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	g0234	1	1	0	0	0	0	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	g0235	1	1	0	0	0	0	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	g0236	1	1	0	0	0	0	ZDHHC15	chrX	75363427	75528037
ZDHHC15_chrX_75363427_75528037	0/0	g0237	1	1	0	0	0	0	ZDHHC15	chrX	75363427	75528037
ZDHHC16_chr10_97441175_97462370	0/0	g0001	67	2	13	45	1	6	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0002	53	8	17	21	2	5	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0003	32	6	3	18	0	5	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/1	g0004	25	6	10	1	2	5	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	1/0	g0005	20	2	0	10	3	4	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0006	18	0	2	16	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0007	10	0	7	3	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0008	9	1	0	8	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0009	6	6	0	0	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0010	5	0	0	2	2	1	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0011	5	0	0	5	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0012	4	0	0	4	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0013	4	3	0	0	0	1	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0014	4	0	0	4	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0015	4	4	0	0	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0016	4	0	0	4	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0017	4	0	2	0	0	2	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0018	4	0	0	2	0	2	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0019	4	0	2	2	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0020	3	3	0	0	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0021	3	3	0	0	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0022	3	2	1	0	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0023	3	1	0	0	0	2	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0024	3	0	0	3	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0025	3	0	0	0	0	3	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0026	3	0	1	2	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0027	3	0	0	3	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0028	2	0	2	0	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0029	2	0	0	2	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0030	2	0	0	0	0	2	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0031	2	1	0	0	0	1	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0032	2	1	0	1	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0033	2	2	0	0	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0034	2	1	0	1	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0035	2	2	0	0	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0036	2	2	0	0	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0037	2	0	1	1	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0038	2	0	1	1	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0039	2	0	0	1	0	1	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0040	2	0	0	2	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0041	2	0	0	2	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0042	2	0	0	2	0	0	ZDHHC16	chr10	97441175	97462370
ZDHHC16_chr10_97441175_97462370	0/0	g0043	2	0	0	2	0	0	ZDHHC16	chr10	97441175	97462370