JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZDHHC17_chr12_76759115_76858696	0/0	g0269	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0270	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0271	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0272	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0273	1	0	0	0	0	1	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0274	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0275	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0276	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0277	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0278	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0279	1	0	1	0	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0280	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0281	1	0	0	0	0	1	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0282	1	0	1	0	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0283	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0284	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0285	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0286	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0287	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0288	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0289	1	0	0	0	0	1	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0290	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0291	1	0	0	1	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0292	1	0	1	0	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0293	1	1	0	0	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC17_chr12_76759115_76858696	0/0	g0294	1	1	0	0	0	0	ZDHHC17	chr12	76759115	76858696
ZDHHC18_chr1_26821688_26862604	0/0	g0001	9	0	3	2	2	2	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0002	6	0	0	4	0	2	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0003	5	5	0	0	0	0	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0004	4	4	0	0	0	0	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0005	4	0	1	0	2	1	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0006	3	0	1	2	0	0	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0007	3	0	3	0	0	0	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0008	3	0	2	0	0	1	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0009	3	0	1	0	1	1	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0010	2	0	2	0	0	0	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0011	2	0	2	0	0	0	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0012	2	0	1	0	0	1	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0013	2	0	0	0	0	2	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0014	2	0	0	2	0	0	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0015	2	0	0	2	0	0	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0016	2	0	1	0	1	0	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0017	2	0	0	0	1	1	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0018	2	0	2	0	0	0	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0019	2	2	0	0	0	0	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0020	2	2	0	0	0	0	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0021	2	2	0	0	0	0	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0022	2	0	1	1	0	0	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0023	2	0	0	0	0	2	ZDHHC18	chr1	26821688	26862604
ZDHHC18_chr1_26821688_26862604	0/0	g0024	2	2	0	0	0	0	ZDHHC18	chr1	26821688	26862604