JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BROX_chr1_222707564_222740187	0/0	g0133	1	0	0	1	0	0	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	g0134	1	0	0	0	0	1	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	g0135	1	0	0	1	0	0	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	g0136	1	1	0	0	0	0	BROX	chr1	222707564	222740187
BRPF1_chr3_9726735_9753015	0/1	g0001	43	2	6	21	3	10	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0002	42	0	3	33	2	4	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0003	29	0	1	27	0	1	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0004	20	4	6	9	0	1	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0005	19	5	7	2	2	3	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0006	17	14	3	0	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0007	15	7	8	0	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0008	12	2	4	2	4	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0009	12	0	0	12	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0010	8	0	3	2	2	1	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0011	6	0	0	6	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0012	5	1	1	1	0	2	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0013	5	0	0	5	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0014	4	0	4	0	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0015	4	1	2	0	1	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0016	4	0	0	4	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0017	4	0	2	1	1	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0018	4	0	0	4	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0019	4	0	3	1	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0020	4	4	0	0	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0021	4	0	0	2	0	2	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0022	4	0	0	0	0	4	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0023	3	0	1	0	0	2	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0024	3	0	0	3	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0025	3	0	0	3	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0026	3	3	0	0	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0027	3	0	1	1	0	1	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0028	3	1	1	1	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0029	3	0	2	0	0	1	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0030	3	0	0	3	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0031	3	3	0	0	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0032	2	0	0	0	0	2	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0033	2	0	0	1	0	1	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0034	2	1	1	0	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0035	2	2	0	0	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0036	2	0	0	1	0	1	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0037	2	2	0	0	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0038	2	0	0	2	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0039	2	0	0	2	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0040	2	0	1	1	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0041	2	2	0	0	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0042	2	0	0	2	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0043	2	0	0	2	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0044	2	2	0	0	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0045	2	2	0	0	0	0	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	g0046	2	0	0	0	1	1	BRPF1	chr3	9726735	9753015