JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZDHHC22_chr14_77126270_77146791	0/0	g0279	1	0	1	0	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0280	1	1	0	0	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0281	1	1	0	0	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0282	1	0	0	0	0	1	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0283	1	0	0	1	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0284	1	0	0	1	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0285	1	0	0	1	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0286	1	0	0	1	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0287	1	0	0	1	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0288	1	0	0	1	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0289	1	0	0	1	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0290	1	0	0	1	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0291	1	0	0	1	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0292	1	0	0	1	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0293	1	0	1	0	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0294	1	0	1	0	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0295	1	0	1	0	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0296	1	1	0	0	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0297	1	0	0	0	1	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0298	1	0	0	0	1	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0299	1	0	1	0	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0300	1	0	1	0	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0301	1	0	1	0	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	g0302	1	1	0	0	0	0	ZDHHC22	chr14	77126270	77146791
ZDHHC23_chr3_113943013_113968373	0/0	g0001	77	8	10	52	3	4	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	1/0	g0002	58	8	9	34	0	6	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0003	52	1	13	36	0	2	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0004	34	5	8	12	2	7	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0005	20	0	2	14	0	4	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0006	11	2	4	1	1	3	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0007	11	8	0	2	0	1	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0008	7	7	0	0	0	0	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0009	7	0	0	7	0	0	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0010	7	0	3	2	0	2	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0011	6	0	0	6	0	0	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0012	5	5	0	0	0	0	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0013	4	1	0	3	0	0	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0014	4	4	0	0	0	0	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0015	4	4	0	0	0	0	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0016	4	0	2	0	2	0	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/1	g0017	4	0	1	0	1	1	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0018	4	1	1	0	2	0	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0019	4	3	1	0	0	0	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0020	3	3	0	0	0	0	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0021	3	0	0	3	0	0	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0022	3	0	2	0	0	1	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0023	3	3	0	0	0	0	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0024	3	0	0	0	3	0	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0025	3	3	0	0	0	0	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	g0026	3	0	3	0	0	0	ZDHHC23	chr3	113943013	113968373